[refactor] moving cubes into own package"

[fix] default parameter run records parameters in session for replay[fix] remove default parameters for several cubes

packages/cubes-core/cubes/apt/essentials/README.md

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+# apt:essentials
+
+**Install essential packages**
+
+## Purpose
+
+This cube installs a curated collection of essential development tools and utilities that are commonly needed for server environments and development workflows.
+
+## What This Cube Does
+
+Installs the following packages via apt:
+
+- **fish** - User-friendly command-line shell with autosuggestions and syntax highlighting
+- **ranger** - Terminal-based file manager with vi key bindings
+- **golang-go** - Go programming language compiler and tools
+- **build-essential** - Essential compilation tools (gcc, g++, make, etc.)
+- **python3** - Python 3 interpreter and standard library
+- **pkg-config** - Helper tool for compiling applications and libraries
+- **age** - Modern file encryption tool with small explicit keys
+
+## Configuration
+
+### Parameters
+
+- **UPDATE** (boolean, default: `true`)
+  - If already installed, should packages be updated?
+  - Set to `false` to skip package cache updates and only install missing packages
+
+## Dependencies
+
+None - this cube can run standalone.
+
+## Use Cases
+
+This cube is ideal as a base dependency for other cubes that require:
+- Basic development tools
+- Modern shell environments
+- File encryption capabilities
+- Python or Go runtimes

packages/cubes-core/cubes/apt/essentials/deploy.py

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+from pyinfra.operations import apt
+from pyinfra import host
+
+UPDATE = host.data.UPDATE
+
+apt.packages(
+    name='Install essentials',
+    packages=[
+        'fish',
+        'build-essential',
+        'python3',
+        'pkg-config',
+        'age'
+    ],
+    update=UPDATE,
+    _sudo=True
+)
+

packages/cubes-core/cubes/apt/essentials/manifest.mjs

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+import { Manifest } from '@bitsquare/nopy-cube';
+import { z } from 'zod';
+
+export default Manifest({
+  id: 'apt:essentials',
+  name: 'Install essential packages',
+  dependencies: () => [],
+  schema: z.object({
+    UPDATE: z.boolean().describe('If already installed should packages be updated').default(true),
+  }),
+});

packages/cubes-core/cubes/apt/install/README.md

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+# apt
+
+**Install packages with apt**
+
+## Purpose
+
+This is a generic cube for installing custom packages via the apt package manager. It's useful when you need to install specific packages that aren't covered by other specialized cubes.
+
+## What This Cube Does
+
+1. Optionally updates the apt package cache
+2. Installs the specified space-separated list of packages
+
+## Configuration
+
+### Parameters
+
+- **UPDATE** (boolean, default: `true`)
+  - Update package cache before installing
+  - Set to `false` to skip updating and only install packages
+
+- **PACKAGES** (string, default: `''`)
+  - Space-separated list of packages to install
+  - Example: `"vim git htop curl wget"`
+
+## Dependencies
+
+None - this cube can run standalone.
+
+## Use Cases
+
+Install development tools:
+```
+PACKAGES="vim git htop tmux"
+```
+
+Install database clients:
+```
+PACKAGES="postgresql-client mysql-client redis-tools"
+```
+
+Install system utilities:
+```
+PACKAGES="curl wget jq unzip zip"
+```
+
+## Example
+
+When deploying this cube, you would typically configure it like:
+```javascript
+exec('apt', {
+  PACKAGES: 'nginx certbot python3-certbot-nginx',
+  UPDATE: true
+})
+```
+
+## Notes
+
+- Package names must match exact apt package names
+- Invalid package names will cause the installation to fail
+- Use `apt search <package>` to find package names
+- Some packages may require additional configuration after installation

packages/cubes-core/cubes/apt/install/deploy.py

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+from pyinfra.operations import apt
+from pyinfra import host
+
+UPDATE = host.data.UPDATE
+PACKAGES = str(host.data.PACKAGES).split(' ')
+
+apt.packages(
+    name='Install essential packages',
+    packages=[
+        'htop', 
+        'age',
+        'git', 
+        'curl', 
+        'nano', 
+        'wget', 
+        'ca-certificates', 
+        'ufw', 
+        "gnupg", 
+        "lsb-release"
+    ],
+    update=UPDATE,
+    _sudo=True
+)
+
+apt.packages(
+    name='Install custom packages',
+    packages=[p.strip() for p in PACKAGES if p],
+    update=UPDATE,
+    _sudo=True
+)
+

packages/cubes-core/cubes/apt/install/manifest.mjs

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+import { Manifest } from '@bitsquare/nopy-cube';
+import { z } from 'zod';
+
+export default Manifest({
+  id: 'apt:install',
+  name: 'Install packages with apt',
+  dependencies: () => [],
+  schema: z.object({
+    UPDATE: z.boolean().describe('Update package cache before installing').default(false),
+    PACKAGES: z
+      .string()
+      .describe('Space-separated list of packages to install')
+      .default('vim htop curl'),
+  }),
+});