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Two follow-ups to db93491 (the 2026-06 CC meta.json format change), after
reverse-engineering the new on-disk layout with a live current-CC subagent +
1Hz fs poller:
(1) Workflow recursion — the Workflow tool nests its agents at
subagents/workflows/{wf}/agent-{id}.jsonl, one level below the flat
subagents/ scan, so they were never tracked. Add watchWorkflowDirs()
(driven from scanForSubagents) to descend and watch each workflow dir
(idempotent; fs.watch recursive is unsupported on Linux, so the ~5s
periodic scan re-drives it — same latency as new-session discovery).
Require the `agent-` prefix in the flat readdir + watch callback so a
workflow dir's sibling journal.jsonl can't register a bogus "journal" agent.
E2E verified against real ~/.claude/projects: 32 workflow-nested agents
discovered (wf_fa35c1d8-4a9), 0 bogus journal agents.
(2) Transcript timing — empirically the per-agent .jsonl IS written at the
standard subagents/ path and grows incrementally (tailable); the
/tmp/.../tasks/<id>.output the prior probe found is just a symlink back to
it. meta.json lands at spawn, the .jsonl a beat later. Add a meta→transcript
upgrade in registerAgentFile: when an agent registered meta-only gets its
sibling .jsonl, re-point filePath, drop the stale sidecar context, start
tailing, and emit subagent:updated (not a duplicate discovered). Corrects the
now-inaccurate "no transcript to tail" doc comment on registerAgentMeta.
Tests: 2 new cases (workflow-nested discovery; journal.jsonl not registered).
All 56 pass; tsc/lint/format clean.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>