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Adds capabilities.mcpConfig to the CLI registry (Claude, Gemini, Codex, OpenCode), an additive src/mcp-sync.ts, GET/POST /api/mcp-sync and a Settings > Agents & CLIs control. Never edits or removes an existing server; backs up each file it changes; reports conflicts. Co-Authored-By: Claude Sonnet 5.5 <noreply@anthropic.com>