Adds capabilities.mcpConfig to the CLI registry (Claude, Gemini, Codex,
OpenCode), an additive src/mcp-sync.ts, GET/POST /api/mcp-sync and a
Settings > Agents & CLIs control. Never edits or removes an existing
server; backs up each file it changes; reports conflicts.
Co-Authored-By: Claude Sonnet 5.5 <noreply@anthropic.com>