fix(docker): address maintainer review on #377

Two real bugs the review caught, both verified live against a real
build on the Unraid host:

1. entrypoint.sh's chown fired on ANY ownership mismatch, not just a
   directory the daemon itself created root-owned. A host tree
   legitimately owned by some other account - an existing
   CODEMAN_CASES_PATH the README already allows pointing at a normal
   projects directory, or appdata under a different PUID/PGID
   convention than the one in use - got silently recursively re-owned
   with one log line to explain it. Now gated on the target actually
   being root-owned; anything else is a clean refusal naming the
   directory, its owner, and PUID/PGID. Start-Codeman.sh also now
   pre-creates CODEMAN_CASES_PATH the same way it already did
   CODEMAN_APPDATA_PATH, so Compose never has to materialise a missing
   bind source as root in the first place - the in-container chown
   becomes a safety net, not the primary mechanism.

2. The CLI-update chown (chown -R .../node_modules /usr/local/bin)
   handed the runtime account write access to entrypoint.sh itself
   (root-owned, executed as root on every container start with
   CHOWN/DAC_OVERRIDE/SETUID/SETGID) and the node binary - owning the
   DIRECTORY is enough to rename it aside and drop a replacement, which
   would let a compromised session arrange for its own script to run
   as root at the next restart. The four CLIs now install into a
   dedicated /opt/codeman-cli prefix (NPM_CONFIG_PREFIX); only that
   directory is chowned, /usr/local stays root-owned throughout.

Smaller fixes from the same review:

- Start-Codeman.sh's volume-refresh label filter wasn't project-scoped:
  a second Compose stack on the same host sharing the `codeman-dist`
  volume KEY could have had ITS volume deleted. Added a
  com.docker.compose.project filter, resolved from this stack's own
  `compose config --format json`.
- Override-file precedence was backwards (checked .yaml before .yml;
  Compose actually prefers .yml) - swapped, plus a warning when both
  exist.
- entrypoint.sh's setpriv now also passes --bounding-set -all, so
  CapBnd actually clears post-drop rather than just CapPrm/CapEff.
- A comment on git_head_commit() noting it returns nothing for a
  worktree checkout (.git as a file), consistent with the script's
  existing -d .git convention elsewhere.
- Doc drift: CLAUDE.md's Docker Compose section still described the
  old pre-created-and-chowned-by-hand model and didn't mention the
  root-then-drop entrypoint; the state-files list was missing
  docker-build-source.json; docs/docker-compose.md and
  docker/.env.example still had the pre-rename `Coding/codeman` path
  in one place each.

Verified end to end against a real build on the Unraid host: a
root-owned bind source is corrected as before; a directory owned by
neither root nor PUID:PGID is refused rather than silently rewritten;
a correctly-owned directory is left alone entirely; the four CLIs
resolve via PATH from /opt/codeman-cli while /usr/local/bin,
/usr/local/lib/node_modules and entrypoint.sh itself stay root-owned;
CapBnd is fully cleared post-drop.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01R9ZSTEenc8soSu9bTi8Xru

CLAUDE.md

@@ -217,7 +217,7 @@ Codeman is a Claude Code session manager with web interface and autonomous Ralph
 
 **Docker cases**: a case can point at a **container**, with any of the CLI run modes running inside it. Like remote-SSH this is a **LOCATION OVERLAY on cases, never a `SessionMode` of its own**. Exactly one long-lived container **per case**, shared by all its sessions, so killing a session kills only that session's in-container tmux and **never** `docker stop` while siblings remain. The workspace is a real host dir bind-mounted at the **same absolute path**, which is what keeps file-routes/watchers on real host bytes and makes the in-container transcript projHash match the host. Credentials are **seeded** (RO mount, copied into the container once) rather than shared RW, so in-container CLIs never write refreshed tokens back to the host, and bind mounts are excluded from `docker commit` so exports stay secret-free. **NEVER a create-time `-e` for secrets, NEVER `--privileged`, NEVER the docker socket.** Config drift is detected via a label hash and a drifted launch is REFUSED rather than silently launched with stale config. ⚠️ A case may instead **ADOPT** a container the user already runs (`DockerCase.owned === false`, mirror of remote-SSH's `owned:false`): Codeman only `exec`s into it and never creates, starts, stops, restarts or removes it, so a missing or stopped container FAILS CLOSED with an actionable message instead of being fixed. Absent = owned, so existing cases are byte-identical. The guarantee is enforced at four independent layers because it cannot be observed by using the feature: `buildDockerStopCommand`/`buildDockerRemoveCommand` throw during pure STRING CONSTRUCTION, `removeDockerContainer` refuses again, drift reports "none" (an adopted container carries no `codeman.confighash` label, so a real comparison would 409 the launch forever), and the boot reaper skips it. ⚠️ Two lifecycle touches the original design missed and that are easy to re-introduce: the full-image export `docker commit`s the container (refused for an adopted case) and the workspace export `docker pause`s it first (skipped — it freezes the owner's processes for the length of the tar). ⚠️ `owned` is applied AFTER `dockerConfigHash`, which takes an explicit field list, or every pre-existing case would trip the drift gate at once. ⚠️ Run modes for a container case come from the CONTAINER (`availableModes`, live-probed): gating the run menu on HOST CLIs (#201) is right for local sessions and wrong here, since a host with no `claude` may run a container that ships one. ⚠️ **A failed probe means opposite things per ownership** — for an ADOPTED case it is a fault worth reporting, for an OWNED one it is the NORMAL state before the first session (the launch chain creates the container), so treating it as a fault hid every agent mode on every freshly linked Docker case behind "start it yourself first". That is why `CaseInfo.docker.owned` is on the wire. ⚠️ Claude is launched WITHOUT `--dangerously-skip-permissions` when the container's exec user is root (Claude Code refuses the flag as root and the refusal is visible only inside the container); which flag to drop is a per-CLI fact, so it is the registry's `overlays.docker.rootCommand`, never a branch. ⚠️ Adoption is **admin-only in multi-user mode**, unlike `docker-link`: linking creates OUR container, whose one bind mount `isWorkingDirAllowed` has already confined, while an adopted container's mounts belong to its owner and one mounting `/` hands the adopter the host. The same reasoning admin-gates the container listing and the in-container directory browser; the preflight instead admits a non-admin for a container already linked to a case they own, because the run menu probes it for every docker case. ⚠️ On the loopback-only prod bind a container cannot reach 127.0.0.1, so in-container hooks need `CODEMAN_DOCKER_BRIDGE_HOOKS=1`; otherwise idle detection falls back to output-based. → [architecture-invariants#docker-cases](docs/architecture-invariants.md#docker-cases), `docs/docker-cases.md` (user guide), `docs/docker-cases-plan.md` (design)
 
-**Docker Compose deployment** (`docker/`, contributed): Codeman itself runs in a container and spawns Docker cases as **SIBLING** containers through the mounted host socket (Docker-outside-of-Docker), never nested. That inverts one assumption the bare-host path takes for granted: the daemon no longer shares Codeman's filesystem, so a bind source valid *inside* Codeman means nothing to it. `resolveDockerDaemonMountSource()` translates sources under HOME into the daemon's namespace via `CODEMAN_DOCKER_HOST_HOME`, and `CODEMAN_CASES_PATH` points the cases dir at a host-absolute bind mount so a workspace resolves to the SAME absolute path on both sides (which is what keeps the transcript projHash matching, per Docker cases above). ⚠️ **`CODEMAN_CASES_PATH` must move every consumer or none**: it is resolved once in `config/cases-dir.ts` because `src/cli.ts` resolves case paths too, and when only the server's `CASES_DIR` learned the override, `codeman skill install --case <name>` reported "Case not found" on exactly the deployment the override exists for. ⚠️ **`.dockerignore` patterns match the WHOLE context-relative path**, so a bare `.env` line excludes only the ROOT file: `docker/.env` (which holds `CODEMAN_PASSWORD` and any provider keys) rode `COPY . .` into the image until `**/.env` was added — verified in both directions with a real build context. ⚠️ A Compose LONG-form bind (`type: bind`) **creates a missing host source directory ROOT-OWNED** rather than refusing, so any bind source the runtime user must write to has to be pre-created and chowned. `CODEMAN_DOCKER_DISABLE_SWAP_LIMIT=1` drops `--memory-swap` (and filters only that one kernel warning) for hosts without swap accounting; `--memory` still applies. ⚠️ The deployment ALSO self-updates in place (the repo bind mount at `/opt/codeman` + a restart-by-exiting supervisor) — see Self-update below and `docs/docker-self-update.md` before touching `server.Dockerfile`, the compose file or `.env.example`, since each is an input to the updater's environment gate. `docs/docker-compose.md` + `docker/README.md` (user guides)
+**Docker Compose deployment** (`docker/`, contributed): Codeman itself runs in a container and spawns Docker cases as **SIBLING** containers through the mounted host socket (Docker-outside-of-Docker), never nested. That inverts one assumption the bare-host path takes for granted: the daemon no longer shares Codeman's filesystem, so a bind source valid *inside* Codeman means nothing to it. `resolveDockerDaemonMountSource()` translates sources under HOME into the daemon's namespace via `CODEMAN_DOCKER_HOST_HOME`, and `CODEMAN_CASES_PATH` points the cases dir at a host-absolute bind mount so a workspace resolves to the SAME absolute path on both sides (which is what keeps the transcript projHash matching, per Docker cases above). ⚠️ **`CODEMAN_CASES_PATH` must move every consumer or none**: it is resolved once in `config/cases-dir.ts` because `src/cli.ts` resolves case paths too, and when only the server's `CASES_DIR` learned the override, `codeman skill install --case <name>` reported "Case not found" on exactly the deployment the override exists for. ⚠️ **`.dockerignore` patterns match the WHOLE context-relative path**, so a bare `.env` line excludes only the ROOT file: `docker/.env` (which holds `CODEMAN_PASSWORD` and any provider keys) rode `COPY . .` into the image until `**/.env` was added — verified in both directions with a real build context. ⚠️ A Compose LONG-form bind (`type: bind`) **creates a missing host source directory ROOT-OWNED** rather than refusing. `Start-Codeman.sh` pre-creates both `CODEMAN_APPDATA_PATH` and `CODEMAN_CASES_PATH` on the host before `up`, which is what keeps the daemon from ever having to materialise either as root in the first place; the container ALSO starts as root (`cap_add: [CHOWN, DAC_OVERRIDE, SETGID, SETUID]` against the base `cap_drop: ALL`) so `docker/entrypoint.sh` can correct a bind source that turns up root-owned anyway (a restored backup, a cleared directory, plain `docker compose up` run without the script) before dropping to `PUID:PGID` via `setpriv` — it refuses instead of chowning a directory owned by neither root nor `PUID:PGID`, since that ownership is not this container's to reassign. `CODEMAN_DOCKER_DISABLE_SWAP_LIMIT=1` drops `--memory-swap` (and filters only that one kernel warning) for hosts without swap accounting; `--memory` still applies. ⚠️ The deployment ALSO self-updates in place (the repo bind mount at `/opt/codeman` + a restart-by-exiting supervisor) — see Self-update below and `docs/docker-self-update.md` before touching `server.Dockerfile`, the compose file or `.env.example`, since each is an input to the updater's environment gate. `docs/docker-compose.md` + `docker/README.md` (user guides)
 
 **CLI registry** (`src/config/cli-registry/`): every run mode is a `CliEntry` — discovery (search dirs, version + identity probes), the launch argv template, env handling, the `capabilities` flags that replace per-CLI branching, and the `overlays` that back the remote/docker pane commands. **No code outside `stock.ts` may branch on a CLI id**; behaviour that genuinely differs is either a capability field or a NAMED PROFILE selected by one (`profiles.ts`), and `test/cli-registry-no-id-branching.test.ts` fails the build if an id check reappears — it matches `===`, `!==`, `case '<id>':` and `[...].includes(mode)`, because an earlier `===`-only version let 36 negated branches survive the conversion (including a seven-mode Ralph chain whose own comment asked the next person to keep it in step with `isExternalCliMode()` by hand). ⚠️ Config contains no shell text: an entry declares typed argv tokens, literals are validated against a safe-word pattern at LOAD time (a bad literal rejects the whole entry — a silently dropped `--no-approve` is not cosmetic), and values resolve through patterns NAMED in code, so a user `clis.json` cannot widen its own validation. ⚠️ `external`, `hooks` and `altScreen` are three INDEPENDENT capabilities on purpose; deriving one from another shipped the `until=stop`-hangs-on-shell bug. ⚠️ Two capability fields carry a REGEX from config (`discovery.version.regex` and `capabilities.workDetect.workingLine`) and both must compile through `compileVersionRegex()`, which caps length and refuses nested quantifiers; `workingLine` is the one that runs on the PTY hot path. ⚠️ **`param` is TWO namespaces.** `launch.params` keys, `env.configSetenv[].fromParam` and `capabilities.privilegedParams[].param` all name a LAUNCH PARAM; the legacy `<Mode>Config` wire field is a separate namespace, bridged only by `launch.legacyConfigAliases`. Getting `privilegedParams[].param` wrong is SILENT — it is the multi-user bypass clamp's only handle on a CLI's privilege switch, and a wrong name clamps nothing with no load error and no failing test — so `schema.ts` rejects an entry naming a param it never declared. Codex is the entry where the two names differ (`bypassApprovals` vs `dangerouslyBypassApprovals`) and therefore the one that catches a regression. ⚠️ Six fields are DECLARED-FOR-LATER and read by nothing (`shortBadge`, `accent`, `capabilities.echo`/`wheelForward`/`keyboardAccessory`/`maxFrameBytes`): all frontend behaviour, transcribed rather than measured, so re-measure before wiring one up; the list is pinned so it cannot quietly grow. Spawn commands are pinned as literal strings in `test/cli-registry-spawn-golden.test.ts`, remote/docker pane commands in `test/location-overlay-commands.test.ts`. ⚠️ That second golden no longer covers **remote claude or remote omp**: both now have their own arm in `buildRemoteLaunchCommand` (a `--session-id || --resume` pair, and `--continue`, so a respawn continues the same conversation) and never reach `defaultRemoteCommandForMode`, which is what that test asserts. Their real pins are `toContain` substrings in `test/tmux-manager.test.ts` and `test/remote-shared-sessions.test.ts`; changing either arm will NOT fail the golden. ⚠️ Anything reading the registry resolves it AT CALL TIME (`sessionModeSchema()`, `allowedEnvPrefixes()`, `dependencyRegistry()`, the resolvers' `searchDirs` thunks) — a module-level const freezes at first import, so a CLI enabled while the server ran moved the run menu but not that surface. `~/.codeman/clis.json` overrides any entry (read-only in this release; nothing writes it, so importing the registry has no filesystem side effects). → `docs/cli-registry.md`
 
@@ -388,7 +388,7 @@ Frontend JS modules have `@fileoverview` with `@dependency`/`@loadorder` tags. L
 
 ## State Files
 
-All in `~/.codeman/`: `state.json` (sessions, settings, respawn, orchestrator, cron jobs/runs, owner tab layouts), `mux-sessions.json` (tmux recovery), `settings.json` (user prefs), `push-keys.json` + `push-subscriptions.json`, `session-lifecycle.jsonl` (audit log), `update-status.json` (self-updater progress, polled across the service restart), `docker-env-applied.json` (Compose deployment only: sha256 of the Dockerfile + compose file the running container was built from, written by `Start-Codeman.sh`, read by the self-updater's environment gate), `linked-cases.json`, `webviews.json` (saved web-tab dashboard URLs), `remote-hosts.json` + `remote-cases.json`, `docker-hosts.json` + `docker-cases.json` + `docker-exports/`, `subagent-window-states.json` + `subagent-parents.json` (subagent window layout, GET/PUT `/api/subagent-window-states`/`-parents`), `hook-secret` (per-instance), `users.json` (multi-user, mode 0600) + `admin-audit.jsonl`, `intents.json` (Read My Mind intent profiles, mode 0600), `certs/` (self-signed TLS for `--https`), `.env` (CODEMAN_USERNAME/PASSWORD fallback for the `codeman attach` CLI). Transient: `self-update-runner.sh`. Multi-user case spaces live OUTSIDE the data dir at `~/codeman-users/<username>/cases` (shared across instances like `~/codeman-cases`, override `CODEMAN_USER_SPACES_DIR`).
+All in `~/.codeman/`: `state.json` (sessions, settings, respawn, orchestrator, cron jobs/runs, owner tab layouts), `mux-sessions.json` (tmux recovery), `settings.json` (user prefs), `push-keys.json` + `push-subscriptions.json`, `session-lifecycle.jsonl` (audit log), `update-status.json` (self-updater progress, polled across the service restart), `docker-env-applied.json` (Compose deployment only: sha256 of the Dockerfile + compose file the running container was built from, written by `Start-Codeman.sh`, read by the self-updater's environment gate), `docker-build-source.json` (Compose deployment only: the checkout's HEAD commit and `package-lock.json` hash the `codeman-node-modules`/`codeman-dist` volumes currently reflect, written by both `Start-Codeman.sh` and a successful in-place self-update, compared to detect and refresh a volume left stale by an externally-triggered rebuild), `linked-cases.json`, `webviews.json` (saved web-tab dashboard URLs), `remote-hosts.json` + `remote-cases.json`, `docker-hosts.json` + `docker-cases.json` + `docker-exports/`, `subagent-window-states.json` + `subagent-parents.json` (subagent window layout, GET/PUT `/api/subagent-window-states`/`-parents`), `hook-secret` (per-instance), `users.json` (multi-user, mode 0600) + `admin-audit.jsonl`, `intents.json` (Read My Mind intent profiles, mode 0600), `certs/` (self-signed TLS for `--https`), `.env` (CODEMAN_USERNAME/PASSWORD fallback for the `codeman attach` CLI). Transient: `self-update-runner.sh`. Multi-user case spaces live OUTSIDE the data dir at `~/codeman-users/<username>/cases` (shared across instances like `~/codeman-cases`, override `CODEMAN_USER_SPACES_DIR`).
 
 **Generated top-level dirs** (all gitignored — don't edit or commit): `dist/` (esbuild output), `out/`, `coverage/`, `test-results/`, `tmp/`, `screenshots-echo-diag/`. The committed gesture bundle (`src/web/public/gesture/gesture-codeman.js`) IS tracked, but its runtime wasm/model assets (`src/web/public/gesture/wasm/`, `*.task`) are fetched and gitignored.